Newtonian Determinism and Pathological Aloneness

Newton's Alchemical manuscript. Click to enlarge.Newton's Laws applied to physical situations describe a Universe that is totally deterministic. For scientist-modelers, the canonical methodology for predicting future events is based on Newton's process: stuff the initial conditions of a system into the appropriate "laws", and let time increase in the resulting equations of motion. Here's your prediction as a time series extending as far out into the future as you need. Next problem!
Chaos theory does not violate this Newtonian modeling process. Instead, chaos demonstrates that the equations of motion are so non-linear that small inaccuracies in the initial conditions lead to wildly varying future predictions - the so-called sensitive dependence on initial conditions that is the foundation of the butterfly effect. In effect prediction becomes limited in many situations, with weather one of the chief systems where predictability is desperately needed, but often leaves all of us wondering where the TV weather people ever got their degrees...So prediction is diminished, even though determinism is as strong as ever.
I was thinking about Newton's legacy of determinism as I read a piece on Newton written several years ago by James Gleick for Slate, titled Isaac Newton's Gravity. Gleick, the author of the text that brought Chaos to the masses (Chaos - The making of a new Science) is also the author of a well-received 2003 bio of Sir Isaac.
Gleick argues convincingly for the need to display Newton's achievements in the context of his rather bizarre life (of which the pathological aloneness in the title of this post is one of Gleick's signature descriptions). In this his approach reminds me very much of the recent biographies of Einstein.
Was Newton as methodical as the way physics is now presented seems to suggest? Were his life, beliefs, etc., a product of immutable beliefs and processes?